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+ module load gcc openmpi openfoam/4.1
+ set +x
+ source ./setup
++ '[' -z x ']'
++++ dirname ./setup
+++ cd .
+++ pwd
++ export WM_PROJECT_USER_DIR=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41
++ WM_PROJECT_USER_DIR=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41
++ export FOAM_USER_APPBIN=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/bin
++ FOAM_USER_APPBIN=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/bin
++ export FOAM_USER_LIBBIN=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/lib
++ FOAM_USER_LIBBIN=/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/lib
++ export PATH=/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/bin:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/wmake:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/bin:/opt/software/gcc-system/openmpi/1.10.0/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/bin
++ PATH=/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/bin:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/wmake:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/bin:/opt/software/gcc-system/openmpi/1.10.0/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/bin
++ export LD_LIBRARY_PATH=/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/ThirdParty-4.1/platforms/linux64GccDPInt32/lib:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/ThirdParty-4.1/platforms/linux64GccDPInt32/lib/openmpi-system:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib/openmpi-system:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib/dummy:/opt/software/gcc-system/openmpi/1.10.0/lib:/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/lib
++ LD_LIBRARY_PATH=/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/ThirdParty-4.1/platforms/linux64GccDPInt32/lib:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/ThirdParty-4.1/platforms/linux64GccDPInt32/lib/openmpi-system:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib/openmpi-system:/opt/software/gcc-system/openmpi-1.10.0/openfoam/4.1/OpenFOAM-4.1/platforms/linux64GccDPInt32Opt/lib/dummy:/opt/software/gcc-system/openmpi/1.10.0/lib:/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/platforms/linux64GccDPInt32Opt/lib
+ cd tutorials
+ foamRunTutorials -test -skipFirst
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/deformDyMMesh_tutorial_ccp
Running surfaceFeatureExtract on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/deformDyMMesh_tutorial_ccp
Running snappyHexMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/deformDyMMesh_tutorial_ccp
writeControl    timeStep;

writeInterval   1;

/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  4.1                                   |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 4.1
Exec   : checkMesh -latestTime
Date   : Jul 15 2020
Time   : 11:28:43
Host   : "host-172-16-103-145.nubes.stfc.ac.uk"
PID    : 11145
Case   : /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/deformDyMMesh_tutorial_ccp
nProcs : 1
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Allowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create polyMesh for time = 40

Time = 40

Mesh stats
    points:           179435
    faces:            499099
    internal faces:   482561
    cells:            160306
    faces per cell:   6.12366
    boundary patches: 3
    point zones:      0
    face zones:       0
    cell zones:       0

Overall number of cells of each type:
    hexahedra:     149746
    prisms:        1734
    wedges:        0
    pyramids:      0
    tet wedges:    0
    tetrahedra:    0
    polyhedra:     8826
    Breakdown of polyhedra by number of faces:
        faces   number of cells
            4   710
            5   524
            6   1530
            9   4760
           12   851
           15   432
           18   19

Checking topology...
    Boundary definition OK.
    Cell to face addressing OK.
    Point usage OK.
    Upper triangular ordering OK.
    Face vertices OK.
    Number of regions: 1 (OK).

Checking patch topology for multiply connected surfaces...
                   Patch    Faces   Points                  Surface topology
         stationaryWalls     8271     8547  ok (non-closed singly connected)
              atmosphere       81      100  ok (non-closed singly connected)
                    buoy     8186     9006      ok (closed singly connected)

Checking geometry...
    Overall domain bounding box (1.25 -0.75 -1) (2.75 0.75 1)
    Mesh has 3 geometric (non-empty/wedge) directions (1 1 1)
    Mesh has 3 solution (non-empty) directions (1 1 1)
    Boundary openness (-7.20562e-18 9.54711e-17 -1.17352e-16) OK.
    Max cell openness = 3.2556e-16 OK.
    Max aspect ratio = 3.79873 OK.
    Minimum face area = 3.87279e-05. Maximum face area = 0.0339185.  Face area magnitudes OK.
    Min volume = 2.27709e-07. Max volume = 0.00570383.  Total volume = 4.41844.  Cell volumes OK.
    Mesh non-orthogonality Max: 61.0354 average: 17.3203
    Non-orthogonality check OK.
    Face pyramids OK.
    Max skewness = 1.73772 OK.
    Coupled point location match (average 0) OK.

Mesh OK.

End

last folder is = 40
writeControl    adjustableRunTime;

writeInterval   0.001;

endTime         41;

make[1]: Entering directory `/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam'
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running surfaceFeatureExtract on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running snappyHexMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running relaxationZoneLayout on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running setWaveField on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running waveDyMFoam on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoy
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running surfaceFeatureExtract on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running snappyHexMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running relaxationZoneLayout on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running setWaveField on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running decomposePar on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running waveDyMFoam in parallel on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar using 4  processes
Running reconstructPar on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyPar
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running surfaceFeatureExtract on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running snappyHexMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running relaxationZoneLayout on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running setWaveField on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running waveDyMFoam on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoySymmetry
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running surfaceFeatureExtract on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running snappyHexMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running relaxationZoneLayout on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running setWaveField on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running waveDyMFoam on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running writeLinearMoorings on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
Running paraFoam on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam/floatingBuoyWithTurbine
make[1]: Leaving directory `/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveDyMFoam'
make[1]: Entering directory `/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam'
Running blockMesh on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
Running waveGaugesNProbes on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
Running setWaveParameters on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
Running relaxationZoneLayout on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
Running setWaveField on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
Running waveFoam on /home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam/waveFlume
make[1]: Leaving directory `/home/jenkins/workspace/CCP-WSI/pipeline_dev/OF41/tutorials/waveFoam'